Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6737490 chr2:118601177 T/C 1.95E-5 176 25.4 25.97 11.65 KM Plot
PCPG rs6738676 chr2:24329344 T/C 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs67397664 chr2:24343867 ACTTT/A 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs67413943 chr14:74387982 A/G 1.22E-5 175 25.47 27.2 10.43 KM Plot
PCPG rs67448739 chr2:241526862 C/T 4.48E-5 174 26.57 21.82 10.3 KM Plot
PCPG rs6747185 chr2:242544925 A/G 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs67480523 chr13:114155411 G/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs6748257 chr2:24329119 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs675108 chr13:37503645 T/C 0.000352 177 6.37 24.85 25.7 KM Plot
PCPG rs6751180 chr2:242510954 A/C 2.94E-5 170 25.87 25.6 20.28 KM Plot
PCPG rs6751268 chr2:242539731 T/C 2.55E-5 175 25.87 26.47 20.28 KM Plot
PCPG rs6751542 chr2:238829715 G/C 1.46E-5 170 23.03 34.37 2.93 KM Plot
PCPG rs6752397 chr2:118532055 G/A 1.54E-5 178 25 30.33 11.65 KM Plot
PCPG rs6754085 chr2:242510779 T/C 4.32E-5 170 25.87 25.47 20.28 KM Plot
PCPG rs67540871 chr16:71498013 GATA/G 0 177 24.52 29.02 3.17 KM Plot